Extending gene ontology in the context of extracellular RNA

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These vesicles Microvesicles (ectosomes, or microparticles) are a type of extracellular vesicle (EV) that are released from the cell membrane. In multicellular organisms, microvesicles and other EVs are found both in tissues (in the interstitial space between cells) and in many types of body fluids. Potent inhibitor of the complement membrane attack complex (MAC) action. Acts by binding to the C8 and/or C9 complements of the assembling MAC, thereby preventing incorporation of the multiple copies of C9 required for complete formation of the osmolytic pore. Se hela listan på academic.oup.com FunRich - Additional Features Request Form.

2020-06-23 · When we compared our results to the current published public EV datasets, Vesiclepedia and Exocarta. It is clear that there were 584 species of previously identified sEVs-associated proteins (the intersecting area in Venn diagrams) detected in sEVs isolated by the novel approach, much more than protein species of sEVs separated by UC (180) and SEC (366). We are not allowed to display external PDFs yet. You will be redirected to the full text document in the repository in a few seconds, if not click here.click here.

Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation.

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We then used Vesiclepedia. Andersen, G. Neumann; Andersen, M.; Nagaeva, Olga; et al. 2012. Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation.

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År 2003 disputerade jag i Kemi & molekylärbioteknik vid Chalmers tekniska högskola, Avd. för Molekylär Bioteknik, under ledning av professor Lena Gustanfsson. Under denna period studerade jag funktionella analysen av tre iso-enzymer (Glyceraldehyde 3-phosphate dehydrogenase) som tillhör övre delen av glykolysen. Mellan 2004 och Use Case 2 Part 2: The exRNA Atlas, DEseq and exceRpt pipelines, Vesiclepedia, and Pathway Analysis (pdf, data, article) Use Case 3: Biomarker Potential and Limitations of Circulating miRNA (pdf, pptx, data, article) Currently, Vesiclepedia comprises 35,264 protein, 18,718 mRNA, 1,772 miRNA and 342 lipid entries encompassed from 341 independent studies that were published over the past several years. Even though databases are indispensable resources for the scientific community, recent studies have shown that more than 50% of the databases are not updated for a long time. 2021-04-11 · the three databases (Vesiclepedia, ExoCarta, EVpedia) for cerebrospinal ﬂuid (CSF), serum and plasma. A set of exclusion ﬁlters was used in this order: number of entries for the bioﬂuid, number of ID entries for Homo sapiens, number of ID entries Update Vesiclepedia data automatically: 10: Completed: 21: Mapping and conversion of acession IDs to different databases: 10: Completed: 22: Venn diagram of the Vesiclepedia would benefit from displaying distribution of the sample genes by EV subtypes: 9: Completed: 23: Description of the Vesiclepedia section in the manual: 8: Completed: 24 Currently, Vesiclepedia comprises 35,264 protein, 18,718 mRNA, 1,772 miRNA and 342 lipid entries encompassed from 341 independent studies that were published over the past several years. Even though databases are indispensable resources for the scientific community, recent studies have shown that more than 50% of the databases are not updated for a long time.

2012-12-18 Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Even though databases are indispensable resources for the scientific community, Researchers at La Trobe University have created Vesiclepedia, a web-based compendium of RNA, proteins, lipids and metabolites that are identified in EVs from both published and unpublished studies.
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Even though databases are indispensable resources for the scientific community, recent stud-ies have shown that more than 50% of the databases are not Vesiclepedia is publicly available and allows users to query and download EV cargo based on different search criteria. The mode of EV isolation and characterization, the biophysical and molecular properties and EV-METRIC are listed in the database aiding biomedical scientists in assessing the quality of the EV preparation and the corresponding data obtained. Currently, Vesiclepedia contains data obtained from 1254 EV studies, 38 146 RNA entries, 349 988 protein entries and 639 lipid/metabolite entries.

a Venn diagram of EV proteins matched to records in the EV databases Exocarta [19], Vesiclepedia We have also assessed the overlap of the proteins in our data set with publicly available EV protein databases ExoCarta, Vesiclepedia, and EVpedia [21], [22], Dec 11, 2020 Vesiclepedia tab can be utilised when analysing extracellular vesicles datasets. ( b) Gene enrichment analysis is used to identify overrepresented Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation. H Kalra, RJ Simpson, H Ji, E Aikawa, P Altevogt, P Askenase, VC Vesiclepedia is a manually curated and community annotation driven compendium of proteins, RNA and lipids identified in all classes of extracellular vesicles.
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PDF Effect of exercise on the plasma vesicular proteome: a

PLoS. Biology 2012;10:e1001450. [200] Mathivanan S, Simpson Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation.

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Vesiclepedia: A Compendium for Extracellular Vesicles with

Involved in signal transduction for T-cell activation complexed to a protein tyrosine 2014-04-30 Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation PLoS Biology , Dec 2012 Hina Kalra , Richard J. Simpson , Hong Ji , … Microvesicles (ectosomes, or microparticles) are a type of extracellular vesicle (EV) that are released from the cell membrane. In multicellular organisms, microvesicles and other EVs are found both in tissues (in the interstitial space between cells) and in many types of body fluids. Delimited by a phospholipid bilayer, microvesicles can be as small as the smallest EVs (30 nm in diameter) or Vesiclepedia is a a manually curated compendium of molecular data (lipid, RNA and protein) identified in different classes of EVs. Kalra et al. Focus on Extracellular Vesicles: Introducing the Next Small Big Thing.

Farmaceutiska fakulteten – Aktiviteter — Helsingfors universitet

Currently, Vesiclepedia contains data obtained from 1254 EV studies, 38 146 RNA entries, 349 988 protein entries and 639 lipid/metabolite entries. Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Vesiclepedia is publicly available and allows users to query and download EV cargo based on different search criteria. The mode of EV isolation and characterization, the biophysical and molecular properties and EV-METRIC are listed in the database aiding biomedical scientists in assessing the quality of the EV preparation and the corresponding data obtained. Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into their microenvironment. Recent studies have elucidated the role of EVs in intercellular communication, path Vesiclepedia - Exosomes. Don't Miss.

Vesiclepedia Data Capture Initiative (Extern organisation) · Pia Siljander (Medlem).